![]() ![]() Cerulean - An interesting new strategy, to first get long contigs, and go back and try to match reads to big contigs.Reviews mention that a lot of paramater tweaking is needed, and you still may not get a good assembly. Appears to be able to handle large reads, but documentation is a bit equivocal. SOAPdenovo2 - Part of a collection of genome assembly tools.Newbler - Proprietary! Must be downloaded from Roche site.Efficient de novo assembly of large genomes using compressed data structures Original reads are extended a base at a time using information from k-mer statistics. Use of k-mer tables makes it possible to extend paired-end reads into super-reads. ![]() MaSuRCA - The unique idea seems to be "super-reads".Raven - a de novo genome assembler for long uncorrected reads. ![]()
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